PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14882.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 82aa    MW: 9425.45 Da    PI: 8.4854
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14882.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS43.74.6e-14381285362
       GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                vE+ +  ++i+n+va+eg+er+ r+ +   Wr+ + ++G+++++ls +   qa+l++++++ +   ++  + ++l++gW
  PK14882.2   3 VEATYCFKAIRNIVATEGKERNIRNVKIDVWRAFFARFGMEELELSPSSIYQANLIVNRFPsGTYCTLGMNGKCLMMGW 81 
                899999*******************************************************555568889999****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.946172IPR005202Transcription factor GRAS
PfamPF035141.6E-11381IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
XEVEATYCFK AIRNIVATEG KERNIRNVKI DVWRAFFARF GMEELELSPS SIYQANLIVN  60
RFPSGTYCTL GMNGKCLMMG WX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947847.12e-33DELLA protein RGL1-like
TrEMBLA0A2P5CVG05e-40A0A2P5CVG0_PARAD; GRAS transcription factor
STRINGXP_008351161.15e-33(Malus domestica)
STRINGXP_008390567.17e-33(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-08RGA-like 2