PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14971.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 56aa    MW: 6406.82 Da    PI: 10.5633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14971.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-072142426
               ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
               + C+f+a+ G C   +rC+F H+
  PK14971.1 21 KVCKFWAE-GRCVKRGRCQFLHS 42
               57******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.461744IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-71942IPR000571Zinc finger, CCCH-type
SMARTSM003560.00251943IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-62142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
XLRGRASESR SGNVKSGSME KVCKFWAEGR CVKRGRCQFL HSWSRGDLYS YLANLX
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.14e-10zinc finger WD40 repeat protein 1