PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK15161.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 318aa MW: 35743.6 Da PI: 10.1051

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK15161.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PK15161.1 102 FVCEICKKGFQRDQNLQLHRRGH 124 89*******************88 PP
2	zf-C2H2	13.3	0.00025	179	201	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + PK15161.1 179 WKCEKCSKRYAVQSDWKAHSKIC 201 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.47E-7	101	124	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.7E-5	101	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.637	102	124	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	102	124	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	104	124	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	144	174	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.4E-5	167	200	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.47E-7	174	199	No hit	No description
SMART	SM00355	130	179	199	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MIKGLMMVDD NISNLTFASS SEIVSASSSS TTTRNDQSLL GTTTTITMYP QNSSTSTNHQ 60 ELPLSPPPPP LNKKKRNHPG NPDPEAEVVA LSPKTLLATN RFVCEICKKG FQRDQNLQLH 120 RRGHNLPWKL KQRSNKDVIK KKVYVCPEIS CVHHDPSRAL GDLTGIKKHF FRKHGEKKWK 180 CEKCSKRYAV QSDWKAHSKI CGTKEYRCDC GTLFSRRDSF ITHRAFCDAL AQESTTTNPP 240 PLPLVNHHFR HHNQGGPTIK REFQDIMAIP SWLTPPLPLP PQQPLMFSSS NNNNTASLLL 300 NMQLPPPQPQ PLPPSSSX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-34	175	233	3	61	Zinc finger protein JACKDAW
5b3h_F	6e-34	175	233	3	61	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097054.1	1e-127	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-114	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2P5FDZ7	1e-129	A0A2P5FDZ7_TREOI; TFIIH C1-like domain containing protein
STRING	XP_010097054.1	1e-126	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-111	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]