PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15192.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 75aa    MW: 9068.36 Da    PI: 10.8424
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15192.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.9e-132573247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     +rW+  E++ l d+v+++G g+Wk+I +      + Rt+ ++k++w++ 
        PK15192.2 25 KRWSLLEEDTLRDGVNKYGRGNWKLILNSYSdifEERTEVDLKDKWRNM 73
                     69********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7111975IPR017930Myb domain
SuperFamilySSF466891.57E-152174IPR009057Homeodomain-like
SMARTSM007174.0E-42375IPR001005SANT/Myb domain
PfamPF002492.5E-102573IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-132575IPR009057Homeodomain-like
CDDcd116606.71E-172575No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
XPKIKVVSPL KKYAPTKILK RRKVKRWSLL EEDTLRDGVN KYGRGNWKLI LNSYSDIFEE  60
RTEVDLKDKW RNMTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KILKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029310.14e-35uncharacterized protein LOC21393956 isoform X1
RefseqXP_024029311.14e-35uncharacterized protein LOC21393956 isoform X2
RefseqXP_024029312.13e-35uncharacterized protein LOC21393956 isoform X3
RefseqXP_024029313.15e-35uncharacterized protein LOC21393957 isoform X1
RefseqXP_024029314.14e-35uncharacterized protein LOC21393957 isoform X2
TrEMBLA0A2N9IDJ74e-33A0A2N9IDJ7_FAGSY; Uncharacterized protein
STRINGXP_009374383.13e-31(Pyrus x bretschneideri)
STRINGXP_008366280.12e-33(Malus domestica)
STRINGEMJ082913e-31(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-14MYB_related family protein