PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK15309.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HSF

Protein Properties

Length: 100aa MW: 11763.3 Da PI: 10.9743

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK15309.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	70.3	3.9e-22	3	79	17	101
TTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 17 eliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 +++sw + g++f+++d++ +a+++LpkyF+h++f+S++RQLn Y F +v++ + + ++h+ F+kg+ +ll +ikr+ PK15309.1 3 TIVSWIRGGTAFCIVDPKMMAEHCLPKYFRHRRFSSLIRQLNFYSFYRVQEGQL--------TIYQHSFFRKGRPDLLVHIKRRG 79 79*********************************************99884........69*****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	9.9E-10	1	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.3E-21	3	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.2E-22	3	78	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.4E-19	3	78	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.6E-5	26	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.6E-5	39	51	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
XTTIVSWIRG GTAFCIVDPK MMAEHCLPKY FRHRRFSSLI RQLNFYSFYR VQEGQLTIYQ 60 HSFFRKGRPD LLVHIKRRGA GKAKDPWFDP LVSSKPPVPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	2e-14	2	78	19	105	Heat shock factor protein 2
5d8l_B	2e-14	2	78	19	105	Heat shock factor protein 2
5d8l_D	2e-14	2	78	19	105	Heat shock factor protein 2
5d8l_F	2e-14	2	78	19	105	Heat shock factor protein 2
5d8l_H	2e-14	2	78	19	105	Heat shock factor protein 2
5hdk_A	2e-14	2	78	24	110	Heat shock factor protein 2
5hdk_B	2e-14	2	78	24	110	Heat shock factor protein 2
5hdk_C	2e-14	2	78	24	110	Heat shock factor protein 2
5hdk_D	2e-14	2	78	24	110	Heat shock factor protein 2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P4YBT3	6e-62	A0A2P4YBT3_9STRA; HSF-type DNA-binding protein
TrEMBL	K3XCA6	2e-61	K3XCA6_GLOUD; Uncharacterized protein
STRING	EPrPV00000016687	5e-64	(Pythium vexans)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G63350.1	8e-16	HSF family protein