PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15505.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 373aa    MW: 41913.5 Da    PI: 9.0629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15505.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13156200554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L  +++Y++sL
  PK15505.1 156 HMISERKRREKLNESFQSLRSLLPPG-----TKKDKASVLNSTTDYLNSL 200
                8899********************97.....8***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.158151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-11151205No hitNo description
SuperFamilySSF474591.09E-17152220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17155218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-11156200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-15157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
XTTTPPPLLT MPHQQAMQAF ASLRQAQFPS SESEDAAMTK AILAVLTSNS PDPTSSSSSS  60
LYSSDHHHHH HHQLINQKSS AFKSYSTTTH HIHHHHHPHP RLSDLNKNMF KRSVSFFRSL  120
NFMRTRQRLQ EAAANAAAAG NTGTTCRPTT STQLHHMISE RKRREKLNES FQSLRSLLPP  180
GTKKDKASVL NSTTDYLNSL KAQVEELSKR NKELEAQVLS AAIIRSTSDD NNIINNNKNV  240
PLLIIDSSST TTTADHDGDD QTRRVNVRIR HVSESTSEEA QIVDLQLMIT QQRANNSINV  300
QVEDFVLRIM EFLKSVNHVS LMSMEANTQL TQSNSTTSSL HRLTLRLRIE GNEWEESTFE  360
EAVRRVVADL AAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRE
2160165RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090062.21e-92putative transcription factor bHLH041 isoform X1
TrEMBLA0A2P5BDE21e-124A0A2P5BDE2_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010090062.17e-92(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-43bHLH family protein