PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15535.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 249aa    MW: 27876.3 Da    PI: 8.1735
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15535.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-1982135356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+ ++t++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k
  PK15535.1  82 KKKRLTTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 135
                56679************************************************9 PP
2HD-ZIP_I/II115.53.3e-3782172292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rl+++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++d +++e+++L++ev++L+  l+
    PK15535.1  82 KKKRLTTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQELDVMSKEKQKLQEEVTKLKGMLR 172
                  9*************************************************************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-2056138IPR009057Homeodomain-like
SuperFamilySSF466892.78E-1964139IPR009057Homeodomain-like
PROSITE profilePS5007117.21677137IPR001356Homeobox domain
SMARTSM003894.5E-1680141IPR001356Homeobox domain
PfamPF000461.0E-1682135IPR001356Homeobox domain
CDDcd000861.36E-1582138No hitNo description
PRINTSPR000318.4E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000318.4E-5117133IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDWNSNLRLV SRPECSYGFL YNYNYDQYQG MDMKHHQAAL MAETTQGLGL LGVPSMEKMN  60
GGGSSGNTGN SSYGMMMSNQ DKKKRLTTDQ LESLERSFQE EIKLDPDRKM KLSRDLGLQP  120
RQIAVWFQNR RARWKAKQLE RLYDALKQEL DVMSKEKQKL QEEVTKLKGM LREQGGGWKQ  180
VSTTGGYTEI SGEETVESTS AGGIRSSSKS LGTNPLGGGG SGGGECSHHI LNVEEYNPVS  240
PPYWLPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKAKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898574.11e-106putative homeobox-leucine zipper protein ATHB-51 isoform X1
TrEMBLA0A2P5FVQ01e-119A0A2P5FVQ0_TREOI; Octamer-binding transcription factor
STRINGXP_008241330.11e-101(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.16e-54homeobox 51