PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15554.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 218aa    MW: 23728.4 Da    PI: 4.7163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15554.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-184292155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  PK15554.1 42 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 92
               68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-124292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3043101IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2143101IPR016177DNA-binding domain
SMARTSM003801.5E-3543106IPR001471AP2/ERF domain
PROSITE profilePS5103223.76243100IPR001471AP2/ERF domain
CDDcd000183.75E-3044102No hitNo description
PRINTSPR003671.3E-124455IPR001471AP2/ERF domain
PRINTSPR003671.3E-1282102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
QLSMEQPLFA EDDSTSTTSS SSTAIASLTE DQGQQRGGTR HPVYRGVRKR RWGKWVSEIR  60
EPRKKSRIWL GSFPVPEMAA KAYDVAAYCL KGRKALLNFP EDVDHLPKPS TCTARDIQAA  120
AAKAAQLITV KSDESCTTNK DIGDSINLIS RDASPDSGDT DDNDDFWGEI ELPELINGGA  180
CHNYWNGCGW TTVLGIEGGA TTASWMEGEG PLPFTACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1931104276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308302.22e-76PREDICTED: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI22e-53ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A2P5FHN02e-83A0A2P5FHN0_TREOI; AP2/ERF domain containing protein
STRINGXP_004308302.18e-76(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-50ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]