PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15571.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 69aa    MW: 8183.59 Da    PI: 11.3742
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15571.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.64.2e-133293056
               HHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 30 reeLAkklgLterqVkvWFqNrRakek 56
               + +LA++lgL+ rqV +WFqN+Ra++k
  PK15571.2  3 KLQLASELGLQPRQVAIWFQNKRARWK 29
               679***********************9 PP
2HD-ZIP_I/II86.24.4e-281662792
  HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                 ++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L ++y++l+++ ++L+ke++ L+ +++
    PK15571.2  1 KKKLQLASELGLQPRQVAIWFQNKRARWKSKQLERDYSILLANYKNLASRFDALKKEKQGLALQVR 66
                 68***********************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000868.33E-7132No hitNo description
PROSITE profilePS5007113.394131IPR001356Homeobox domain
PfamPF000461.5E-10229IPR001356Homeobox domain
SuperFamilySSF466894.71E-12241IPR009057Homeodomain-like
PRINTSPR000312.1E-6211IPR000047Helix-turn-helix motif
Gene3DG3DSA:1.10.10.601.4E-13338IPR009057Homeodomain-like
PROSITE patternPS000270629IPR017970Homeobox, conserved site
PRINTSPR000312.1E-61127IPR000047Helix-turn-helix motif
PfamPF021831.2E-133166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
KKKLQLASEL GLQPRQVAIW FQNKRARWKS KQLERDYSIL LANYKNLASR FDALKKEKQG  60
LALQVRKNQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024137.11e-32homeobox-leucine zipper protein ATHB-12
SwissprotP468976e-27ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2P5FIG79e-32A0A2P5FIG7_TREOI; Octamer-binding transcription factor
TrEMBLW9RLG57e-32W9RLG5_9ROSA; Homeobox-leucine zipper protein ATHB-12
STRINGXP_010100685.11e-32(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-29homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]