PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK15647.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 85aa MW: 9212.19 Da PI: 7.6133

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK15647.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	56.1	1.1e-17	26	84	23	81
DUF260 23 paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 p++q++++ +v+k+FG++ ++++++a+p+++r+++++sl+yeA r+ +Pv+Gavg+++ PK15647.1 26 PQAQAHATLFVAKFFGRAGLMSFISAVPQHHRPALFQSLLYEAVGRTVNPVNGAVGLLW 84 999*****************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.752	3	85	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-14	26	84	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MAAEFSEKVA VIIVCLENVY SGXETPQAQA HATLFVAKFF GRAGLMSFIS AVPQHHRPAL 60 FQSLLYEAVG RTVNPVNGAV GLLWX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231911.1	3e-32	LOB domain-containing protein 37
Refseq	XP_006339815.1	2e-32	PREDICTED: LOB domain-containing protein 37
Refseq	XP_011088059.1	4e-32	LOB domain-containing protein 37-like
Refseq	XP_016560963.1	3e-32	PREDICTED: LOB domain-containing protein 37
Refseq	XP_022033459.1	2e-32	LOB domain-containing protein 38-like
Swissprot	Q9SN23	3e-31	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2P5EYF3	4e-35	A0A2P5EYF3_TREOI; Lateral organ boundaries domain containing protein
STRING	Solyc02g092550.2.1	1e-31	(Solanum lycopersicum)
STRING	PGSC0003DMT400064185	9e-32	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-33	LOB domain-containing protein 38