PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15669.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 714aa    MW: 83388.7 Da    PI: 8.9146
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15669.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.83e-17490191
       FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
               ++Y+eY+k+ GF ++k++++ s ++++i   t+ Cs+ gk+e++k++     ++++ tr++Cka+++ +  +d k +++++ leHnH l+p
  PK15669.1  4 EYYREYGKQEGFGIKKKTTRAS-EDRKIRFLTLSCSRAGKSESHKQN---FLNPNPLTRVECKARINGTILEDRKCKINSVILEHNHGLSP 90
               69***************99999.7777***************99888...999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-14490IPR004330FAR1 DNA binding domain
PfamPF105511.5E-38210304IPR018289MULE transposase domain
PROSITE profilePS5096610.373493529IPR007527Zinc finger, SWIM-type
PfamPF044344.4E-5502526IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-7504531IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
DLYEYYREYG KQEGFGIKKK TTRASEDRKI RFLTLSCSRA GKSESHKQNF LNPNPLTRVE  60
CKARINGTIL EDRKCKINSV ILEHNHGLSP QKSRFYLCNR EISIGAQRKL ELNDRAGISV  120
VKNFQSFMVE AGGHENVPFL EKDCRNLIEK ARRLRLGVGD AEAIHKYFVQ MQSKNSSFFY  180
MMDLDDKSRI KNVFWADARS RAMYEEFGDV VTFDTTYLTN KYDMPFAPFI GVNHHGQSIL  240
LGCGLLSSET TETFIWLFKT WLACMSGCAP KAIITDQAKA MKNAIEVVFP QSRHRWCLWH  300
IMKKIPEKLS SYQLYKLIKK ALKNCVYNSL TKEEFEVTWD FFINDFNLQD NEWLNSLYEE  360
RNRWVPAFVK DTFWAGMSTT QRSESMNAFF DGYVNSKTTL KQFVEQYDSA LRDKMEKENR  420
ADFQSFSTII PCVTHFAIEK QFHAAYTNTK FKEFQKELIG KIYCDVSCLD ESSGLFNICE  480
AVFFEGVSRE VNFKVHFNQE NSEVQCACQL FEFSGILCKH AISILIRMGV SNVPMKYILS  540
RWKKNIRKCH TKIKLIYDDL HSNPISQRYH ELQKKFDKVA EWAIVSDEKF KRLWNVIHEF  600
EINLAQDEVD CVPDFTITQD YPTMSSHEEM INESNKPRSP IAVRRHGRPP KNRKVPMVEK  660
LIIKEKKAKG QKLKNERKKV KDTNTVQSCM HNENIIGTFG RMNKQNEEDP CHVI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487193e-45AC148719.51 Medicago truncatula clone mth2-41m14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893354.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
RefseqXP_024923569.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A446IR960.0A0A446IR96_TRITD; Uncharacterized protein
STRINGTraes_1AS_F08B3720F.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-125FAR1 family protein