PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15688.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 268aa    MW: 30457.8 Da    PI: 9.0968
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15688.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32196254159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  PK15688.1 196 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 254
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33181254IPR003657WRKY domain
SuperFamilySSF1182901.57E-28188255IPR003657WRKY domain
PROSITE profilePS5081129.344191256IPR003657WRKY domain
SMARTSM007749.8E-37196255IPR003657WRKY domain
PfamPF031064.5E-25197253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASTSQAMVN QGLYEDEEAV PAQLGFFSYA PNSSYLTLIP PLVCLKNFSS SSSSPPSSTT  60
TTTFLPSSNN NNNNNLSHET LLSSLSSTTA NYSKQREDHF SLSDHHNHYD SGSQLLSLQR  120
STANLRSWGD VNECLGSKRS SIINNGGELG HEYRDHHHHQ HRHIGVSTMK MKKIKGRRKV  180
REPRFCFKTM SEVDVLDDGY KWRKYGQKVV KNTQHPRSYY RCTQDNCRVK KRVERLAEDP  240
RMVITTYEGR HVHSPSHDLE DSQSPSPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27187253874Probable WRKY transcription factor 4
2lex_A5e-27187253874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297591e-94KP229759.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY30) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086912.11e-103probable WRKY transcription factor 13
SwissprotQ9SVB76e-64WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A2P5ABG71e-124A0A2P5ABG7_PARAD; WRKY domain containing protein
STRINGXP_010086912.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-60WRKY DNA-binding protein 13