PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15923.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 382aa    MW: 42142 Da    PI: 8.3845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15923.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027142165123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                ++C+ Cg+ F  +++L++H+ + H
  PK15923.1 142 FPCTACGEIFQKPHLLEQHLTMkH 165
                89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.39142170IPR007087Zinc finger, C2H2
PROSITE patternPS000280144165IPR007087Zinc finger, C2H2
SuperFamilySSF563991.34E-14167381No hitNo description
Gene3DG3DSA:3.90.228.101.7E-5173286IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.102.4E-5316381IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MATPTISSLL TKLISHFFLL FLNLGCFVFS TSPTTGTDNH IQSHGNHSKK RKTQKALSSS  60
WSYIKGIFSA KTRKTCIQTH PSTPPRSSQH SIVSLVNPEQ SDQSSAAAVV EAAPRKKHSP  120
SSESDIAAGD SDLFFPLRND IFPCTACGEI FQKPHLLEQH LTMKHAVSEL YDGDSGKNIV  180
RIIFKSGWND TRNKSPIIHR VLKIHNSAKI LTRFEEYRET VKAKAARNGA VQKSRDERCI  240
ADGNELLRFH CSTFLCDLGV SGSSGICNHQ YCSVCGIIKS GFSPKLDGIS TLSSSWRAHV  300
AIPEEIEEEF RFMNVKRAML VCRVVAGRVG CETDDVEKDD GVGFDSVLGR GGNGAHTRLD  360
EEELLVFNPR AVLPCFVIVY TV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104669.10.0uncharacterized protein LOC21404881
TrEMBLA0A2P5ASL10.0A0A2P5ASL1_TREOI; Zinc finger, C2H2 domain containing protein
STRINGXP_010104669.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-125C2H2 family protein