PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK16012.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 115aa MW: 13243.6 Da PI: 10.4178

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK16012.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.2	1.4e-13	35	114	1	73
EEEE-..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlks..grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkang 73 f+ + ps+v+++ +lv+p f+++h +++ ++++++l+ ++gr+W+ k+ + + s+++ +++GWk Fv++n+ PK16012.1 35 FIVPMQPSSVGSKsrYNLVIPSFFVKKHlFSISSGPQDVILTVQDGRTWSAKYYVhvrpHGISSTFRIESGWKAFVQDND 114 677889999999955458*********66677999************5578666666669**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.4E-14	28	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-13	30	114	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.96E-15	33	114	No hit	No description
Pfam	PF02362	2.6E-11	35	114	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.207	37	115	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
XPVPEKFIRN QKLSRKEKAE AFQRAIDFKS EDPFFIVPMQ PSSVGSKSRY NLVIPSFFVK 60 KHLFSISSGP QDVILTVQDG RTWSAKYYVH VRPHGISSTF RIESGWKAFV QDNDX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5BZ38	4e-22	A0A2P5BZ38_PARAD; B3 DNA binding domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14300	4	16