PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16243.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 738aa    MW: 80438.9 Da    PI: 5.8265
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16243.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2064119156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PK16243.1  64 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 119
                688999***********************************************999 PP
2START2221.9e-692574781206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela +a++el+++a+ +ep+W++s       +n+de++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d++ qW++ +     +a+ lev+ss
  PK16243.1 257 ELAVAAMEELIRMAQMGEPLWMTSLdgasAVLNEDEYVRTFPRGIGpkpagFKCEASRETAVVIMNHINLVEILMDVN-QWSTVFSgivsRAMALEVLSS 355
                57899********************999999************999********************************.********************9 PP

                T.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
      START  88 g.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skvtwvehv++++r +h+
  PK16243.1 356 TgvagnfnGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHN 451
                99******************************************************995....************************************* PP

                HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 180 llrslvksglaegaktwvatlqrqcek 206
                l+++lv+sg+ +gak+wvatl+rqce+
  PK16243.1 452 LYKQLVNSGHGFGAKRWVATLDRQCER 478
                *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2343119IPR009057Homeodomain-like
SuperFamilySSF466891.21E-1952121IPR009057Homeodomain-like
PROSITE profilePS5007116.95761121IPR001356Homeobox domain
SMARTSM003894.8E-2062125IPR001356Homeobox domain
PfamPF000464.1E-1864119IPR001356Homeobox domain
CDDcd000862.54E-1964122No hitNo description
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PROSITE profilePS5084844.99248481IPR002913START domain
SuperFamilySSF559617.0E-37249480No hitNo description
CDDcd088753.55E-129252477No hitNo description
SMARTSM002349.8E-61257478IPR002913START domain
PfamPF018522.3E-58258478IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-6358460IPR023393START-like domain
SuperFamilySSF559617.33E-25497730No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MMEGSGHQLL HPLDMTAQNT TSESDLNARL GRDDDVFDSA TKSGSENQDG GASGDDHDQQ  60
RPKKKRYHRH TQHQIQEMEA FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKT  120
QHERHENTQL RTENDKLRAD NMRYREALSN ASCPNCGGPT AIGEMSFDEH HLRLENARLR  180
EEIDRISAIA AKYVGKPVVS YPILSSPATP RPLELGVGNF GSQATMGGEM YGGGGSTGDL  240
LRTMSAPNEA DKPMIIELAV AAMEELIRMA QMGEPLWMTS LDGASAVLNE DEYVRTFPRG  300
IGPKPAGFKC EASRETAVVI MNHINLVEIL MDVNQWSTVF SGIVSRAMAL EVLSSTGVAG  360
NFNGALQVMT AEFQVPSPLV PTRESYYVRY CKQHADGTWA VVDVSLDNLR PSPAVRCRRR  420
PSGCLIQEMP NGYSKVTWVE HVEVDDRGVH NLYKQLVNSG HGFGAKRWVA TLDRQCERLA  480
SAMATNIPTG DVGVITNQEG RKSMLKLAER MVISFCAGVS ASTTHTWTTL SGTGADDVRV  540
MTRKSVDDPG RPPGIVLSAA TSFWLPVPPK RVFDFLRDEH SRSEWDILSN GGVVQEMAHI  600
ANGRETGNCV SLLRVNSANS SQSNMLILQE SCTDQTASFV IYAPVDIVAM NVVLNGGDPD  660
YVALLPSGFA ILPDGSGGGG DGIVEPCSSG GSLLTVAFQI LVDSVPTAKL SLGSVATVNN  720
LIACTVERIK ASLSCDTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029967.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2P5D6040.0A0A2P5D604_PARAD; Octamer-binding transcription factor
STRINGXP_010109517.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2