PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16276.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 150aa    MW: 16651.4 Da    PI: 7.371
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16276.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0016386123
               EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
               y C +Cg + s k + ++Hi t H
  PK16276.1 63 YFCDYCGICRSKKALITSHILTdH 86
               78******************9988 PP
2zf-C2H221.75.2e-07110131223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +C++Cg +F+   +Lk+H+ +H
  PK16276.1 110 TCEKCGLTFKKAAYLKQHMLSH 131
                6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.87E-661131No hitNo description
SMARTSM00355336386IPR015880Zinc finger, C2H2-like
SMARTSM003550.019109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305109136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4110134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
XSSLSSIVFT LTSGPFSIFV LLSVDSLSSI GANSSSLTLS RFYQSEMDEA KEDKPIFRDI  60
RRYFCDYCGI CRSKKALITS HILTDHKDEL DKVRAGGDNS TEGLKESKNT CEKCGLTFKK  120
AAYLKQHMLS HSTEIRISVN CLLSLDDGVX
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104482.19e-34transcription factor IIIA
RefseqXP_015867533.17e-34transcription factor IIIA isoform X1
RefseqXP_023920458.11e-33transcription factor IIIA isoform X1
RefseqXP_024924686.17e-34transcription factor IIIA isoform X1
RefseqXP_024924687.17e-34transcription factor IIIA isoform X2
SwissprotQ84MZ42e-16TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2P5CW951e-37A0A2P5CW95_PARAD; TFIIH C1-like domain containing protein
STRINGXP_008222684.12e-33(Prunus mume)
STRINGXP_010104482.13e-33(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-18transcription factor IIIA