PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16358.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YB
Protein Properties Length: 196aa    MW: 22248.3 Da    PI: 6.6265
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16358.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.49.7e-5421116297
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wala lGf+dy+eplk yl k+relege+
  PK16358.1  21 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAALGFDDYAEPLKRYLLKFRELEGER 116
                89********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-5317144IPR009072Histone-fold
SuperFamilySSF471134.94E-4023136IPR009072Histone-fold
PfamPF008089.3E-282690IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.6E-195472No hitNo description
PROSITE patternPS0068505773IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.6E-197391No hitNo description
PRINTSPR006155.6E-1992110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
PSSTTNISHH QDQIDHHGFI KEQDRLLPIA NVGRIMKQIL PPNAKISKEA KETMQECVSE  60
FISFVTGEAS DKCHKEKRKT VNGDDICWAL AALGFDDYAE PLKRYLLKFR ELEGERSSAH  120
HTNNNTINKG NLDQDNHNNH NQNSEFMMNS NYIGASSSGD HDHQRHLHVS SHNNNNNNAS  180
LEFNVLERSN NNNSFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4420111192Transcription factor HapC (Eurofung)
4g92_B1e-4420111192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891940.13e-70nuclear transcription factor Y subunit B-1
SwissprotO822481e-58NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2P5FFR91e-73A0A2P5FFR9_TREOI; Nuclear transcription factor Y subunit B
STRINGPOPTR_0014s12710.12e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.18e-61nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]