PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16724.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TCP
Protein Properties Length: 243aa    MW: 27074.9 Da    PI: 10.0966
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16724.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.45.2e-38221952134
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................... 65 
                 g+kdrhsk+ T++g+RdRRvRls+++a+ f+dLqd+LGfd++sk++eWL+++a +ai el+++                                    
  PK16724.1  22 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIHFYDLQDRLGFDQPSKAVEWLINAASEAIAELPSLngsfpdtpkqlsdekrgsvgtntgggeqgfdsaeve 121
                689******************************************************************9999999999999999999999855544443 PP

        TCP  66 ....ssssasec...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                    +          ++ +  ++++n+++++  +++a+s+ s++s+ s l+l++      r kar+rarer ++++ ++n
  PK16724.1 122 mdgiN------YhhhQHLQLDQQNQNQNQNQPLSKSACSSTSETSKGSGLSLSRsdirVNRVKARERARERAAKEKEKEN 195
                33221......022345555555556666666777777777777777778887754446669********7777666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-4423193IPR005333Transcription factor, TCP
PROSITE profilePS5136930.8422482IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.946173191IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XGANRLRGWH HSSRIIRVSR ASGGKDRHSK VWTSKGLRDR RVRLSVTTAI HFYDLQDRLG  60
FDQPSKAVEW LINAASEAIA ELPSLNGSFP DTPKQLSDEK RGSVGTNTGG GEQGFDSAEV  120
EMDGINYHHH QHLQLDQQNQ NQNQNQPLSK SACSSTSETS KGSGLSLSRS DIRVNRVKAR  180
ERARERAAKE KEKENESRIV VHHNDNNNNN NNNLNSISQN STFTELLTAG MSNNSNNNNN  240
NNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-232983155Putative transcription factor PCF6
5zkt_B3e-232983155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00063PBMTransfer from AT4G18390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306852.11e-106transcription factor TCP2-like
RefseqXP_012072140.11e-106transcription factor TCP2-like isoform X1
RefseqXP_012072141.11e-106transcription factor TCP2-like isoform X1
RefseqXP_012072142.11e-106transcription factor TCP2-like isoform X1
RefseqXP_012072143.11e-106transcription factor TCP2-like isoform X1
RefseqXP_020534893.11e-106transcription factor TCP2-like isoform X1
SwissprotQ93V434e-53TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A067L0H71e-104A0A067L0H7_JATCU; TCP transcription factor BRC1
STRINGPOPTR_0004s06440.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]