PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16748.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 901aa    MW: 99954.4 Da    PI: 9.1264
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16748.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.24.9e-07187206525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                lC++f + G C++G++C+F H
  PK16748.1 187 LCKDFTA-GRCRRGNNCPFLH 206
                9******.************* PP
2zf-CCCH17.85.8e-06246266526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                lC+ f + G C++G++CkF Hg
  PK16748.1 246 LCNEFVK-GRCRRGASCKFEHG 266
                8******.***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.507182209IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5184208IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5184207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6186210IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4187206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291241268IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4243267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4246269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953304331IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042304330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5307329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MSGSGRKRSS KWDLRDQPKF EDINAQDDNW PGKTGRSIYQ RESGHGWQSP ELAGSNGSKW  60
SALDSNDIRS KHDSMFPTRD TFSGSRGSHK NENIDKDCNR YVSDSMAWDA DEDYGTRMSP  120
GLDEWRQQHH SQSPKSGWSR SMRDRSRSRS RSRSRSRGRS RSPVRSLRRE SGFLDRSRSR  180
SGVSNQLCKD FTAGRCRRGN NCPFLHEDSE AYEDYWDGRH RKGGGSKYAT GDTRDYPLRS  240
GRSFGLCNEF VKGRCRRGAS CKFEHGASDG FSKGPTNEFT REKESDRRRR DTSDERGVEH  300
EARRNSDIPC RFFAAGNCRN GKHCRFSHHN QAYASPDRKS QDKWALGRKS DDVNRVWDGP  360
KWSDTGIALD AAKFKENISG NIGALNASST AWPMSERLGN RVNNENITSG ADLNVSCEAA  420
KNDKEPIPWK TNNVAPAMGL SEVRCTDKWL VNMDMSPDWN YSVPSANHVV KEENSRVTQH  480
SESLNDMHVM SGKQSIIPEA SGRINSASGA VQPIIMEKSV FQPNHELKDD SAIALPYDNN  540
DVVRKTMNSR SDLNMFDQNC QPSSVYPFSS LNTIGQSQAV IPTEPQGGIL KNLQTNTTHT  600
EGTLVAKPDF REAKTSLMNS GIDPLQRIVN VTDLSASLVQ LFGNGQQLPQ LYAALNSNNS  660
TGTPSFTSGS VTPTILPDAV SGPHKHYDPI HDSTESRRPE VSNNTSAVLT NNTVKASDSD  720
GKPEIQLKNV TLSSLPVVSD ATDCKQAGGS IGETNLTRKL LTPLEPNASS KATKGKIEQI  780
SGENKKTEEE SIKVEETDPL DGEDKEGAND GKKNKDAKGV RAFKFALVEF IKELLKPTWK  840
DGQIGKDAYK TIVKKVVDKV TGTMQGANVP QTQEKIDHYL SFSKAKLTKL VQAYVEKSQK  900
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150158RSRSRSRGR
2150160RSRSRSRGRSR
3280289REKESDRRRR
4285290DRRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017747.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_024017748.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_024017749.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_024017750.10.0zinc finger CCCH domain-containing protein 38
TrEMBLA0A2P5E9L20.0A0A2P5E9L2_TREOI; Zinc finger, CCCH-type
STRINGXP_010090865.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-13C3H family protein