PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK16897.5

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

YABBY

Protein Properties

Length: 235aa MW: 26282.7 Da PI: 7.9356

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK16897.5	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	221.7	2.1e-68	16	198	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvv..tvrCGhCtsllsvnlakasqllaaeshldeslkee.....lleelkveeenlksnvekeesast 94 ++ ssseq+Cyv+Cn C+t+lavsvP +slfk v tvrCGhCt+ll vn+ + + hl++s+ ++ llee ++ n+ +n+++ PK16897.5 16 HLSSSSEQLCYVHCNICDTVLAVSVPCSSLFKSVtlTVRCGHCTNLLPVNMCGLLLPSPNQFHLGHSFFNPashhnLLEEIPNSAPNFLMNQSSMA---- 111 56799************************9773369***********9999999**998776666655555555555444443332.... PP YABBY 95 svssekl...........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ +++++e++r+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl PK16897.5 112 DFAVVPPrgvnntrhhdhHHHHHHEISRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 198 2222111222333444447788999999*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.7E-67	20	198	IPR006780	YABBY protein
SuperFamily	SSF47095	1.1E-7	141	191	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.0E-4	147	192	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSSSSASTIL PQQLDHLSSS SEQLCYVHCN ICDTVLAVSV PCSSLFKSVT LTVRCGHCTN 60 LLPVNMCGLL LPSPNQFHLG HSFFNPASHH NLLEEIPNSA PNFLMNQSSM ADFAVVPPRG 120 VNNTRHHDHH HHHHHEISRP PVINRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDISHREA 180 FSAAAKNWAH FPHIHFGLMP DQTGKKTNVR QQEGEDVLMK DGFFASANQV GVSPY

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146879	7e-62	BT146879.1 Lotus japonicus clone JCVI-FLLj-2N22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015866124.1	1e-124	axial regulator YABBY 1 isoform X2
Swissprot	Q01JG2	3e-76	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	3e-76	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	W9QUG4	1e-121	W9QUG4_9ROSA; Uncharacterized protein
STRING	XP_010093672.1	1e-122	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2040	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	6e-76	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]