PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17166.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SBP
Protein Properties Length: 134aa    MW: 14745.8 Da    PI: 6.0067
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17166.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP742.6e-2387133248
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                Cq+++C+adl+eak+yhrrhk+Ce+h+ka+vv v+gl+qrfCqqCsr
  PK17166.1  87 CQADNCNADLTEAKHYHRRHKICEFHAKASVVSVAGLQQRFCQQCSR 133
                **********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-2580133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.25684134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-2285133IPR004333Transcription factor, SBP-box
PfamPF031101.3E-1787133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEPNRAQGKR SHKCKIEDEI EEEEDEDEDE DDDVSGLGFG SSSSEDIMRK KRPAQYSINS  60
SSSTSSCGAV VRRSGSSAGG STRPPSCQAD NCNADLTEAK HYHRRHKICE FHAKASVVSV  120
AGLQQRFCQQ CSRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-1980133457squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108163.18e-32squamosa promoter-binding protein 1
TrEMBLA0A2P5AN348e-41A0A2P5AN34_PARAD; SBP-box transcription factor
STRINGXP_010108163.13e-31(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.22e-23squamosa promoter binding protein-like 8