PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK17217.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 134aa MW: 15033.2 Da PI: 8.5085

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17217.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137	6.6e-43	33	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++e PK17217.2 33 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAE 132 7***********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.841	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-43	33	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
QDPIFNHHHQ QQQQQMGRRH MLGPPGTLNT ITPCAACKLL RRRCAQECPF SPYFSPHEPH 60 KFASVHKVFG ASNVSKMLME VPENQRADAA NSLVYEANVR LRDPVYGCMG AISALQQQVQ 120 SLQAELNAVR AEIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-45	25	134	3	112	LOB family transfactor Ramosa2.1
5ly0_B	8e-45	25	134	3	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021617781.1	7e-84	LOB domain-containing protein 15
Refseq	XP_022746093.1	9e-84	LOB domain-containing protein 15-like
Refseq	XP_023925198.1	9e-84	LOB domain-containing protein 15
Swissprot	Q8L5T5	5e-70	LBD15_ARATH; LOB domain-containing protein 15
Swissprot	Q9AT61	2e-69	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2P5AHJ8	3e-83	A0A2P5AHJ8_TREOI; Wilm's tumor protein
STRING	cassava4.1_031813m	3e-83	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	8e-70	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]