PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK17289.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 672aa MW: 78430.4 Da PI: 6.7508

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17289.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.5e-24	58	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+Y+k+ GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++ +w++ ++eleHnH+++ PK17289.1 58 DFYNAYGKQQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIKLVDSTRWRIVEVELEHNHQVS 142 6*******************999*************99888.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-21	58	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-26	265	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.778	551	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MEEVCLNSEP VFDEGDEYDV DGHFLIVEHD EESGETQRKD PPLPTVGLEF DSFDAAYDFY 60 NAYGKQQGFG IRVSNSWFRS KRKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIVI 120 KLVDSTRWRI VEVELEHNHQ VSPQIKRFYK SHKRMIVAAK KTQPPPQPVT EVHTIKLYKT 180 AVLDSGCNGY LSFNESEGMS SDDRSKCLEL KEGDAHAVYN YFCRMKMTNP NFFYLMDIDD 240 DGHLRNVFWA DARSRAAYGY FCDTIAIDTT CLANKYEIPL ISFVGVNHHG QSILLGCGFI 300 GQESVDYFLW MLRAWLKCML DKPPRVVITD HCKPLQTAIS EVIPKARHCY CLWYIMHRVP 360 EKLGGLKGYE TIKRQLNKSV YNSLKIAEFE TSWADMIKRY GLENNKWLQL LYEERQLWVP 420 VYLKDIFLAG MIPIQENESL IAFFDGYVHK HTSFKEFVDK YDLALHRRHM KEVTADLESR 480 NTTPELKTRC NFETQLSKIY TREIFKRFQS EVEGMYSCFN TRQVNFNGPI ITYIVKERVE 540 VEGSEKEVKY HEVLFETTQV DVRCICSLFN YKGYLCRHAL NVLNYNGIEE IPSRYILPRW 600 SKDFKCRYLL DHDSSDSSVD MYNNPLYWYN NLIKLSLPVV EEGAQSQERY KTALQELEAL 660 LNKFNLVEDN IV

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MEEVCLNSEP VFDEGDEYDV DGHFLIVEHD EESGETQRKD PPLPTVGLEF DSFDAAYDFY  60
NAYGKQQGFG IRVSNSWFRS KRKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIVI  120
KLVDSTRWRI VEVELEHNHQ VSPQIKRFYK SHKRMIVAAK KTQPPPQPVT EVHTIKLYKT  180
AVLDSGCNGY LSFNESEGMS SDDRSKCLEL KEGDAHAVYN YFCRMKMTNP NFFYLMDIDD  240
DGHLRNVFWA DARSRAAYGY FCDTIAIDTT CLANKYEIPL ISFVGVNHHG QSILLGCGFI  300
GQESVDYFLW MLRAWLKCML DKPPRVVITD HCKPLQTAIS EVIPKARHCY CLWYIMHRVP  360
EKLGGLKGYE TIKRQLNKSV YNSLKIAEFE TSWADMIKRY GLENNKWLQL LYEERQLWVP  420
VYLKDIFLAG MIPIQENESL IAFFDGYVHK HTSFKEFVDK YDLALHRRHM KEVTADLESR  480
NTTPELKTRC NFETQLSKIY TREIFKRFQS EVEGMYSCFN TRQVNFNGPI ITYIVKERVE  540
VEGSEKEVKY HEVLFETTQV DVRCICSLFN YKGYLCRHAL NVLNYNGIEE IPSRYILPRW  600
SKDFKCRYLL DHDSSDSSVD MYNNPLYWYN NLIKLSLPVV EEGAQSQERY KTALQELEAL  660
LNKFNLVEDN IV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023607.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	M5Y3I6	0.0	M5Y3I6_PRUPE; Uncharacterized protein
STRING	EMJ26340	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]