PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17334.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 304aa    MW: 33131.1 Da    PI: 8.4146
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17334.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18156210256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  PK17334.1 156 RKKLRLTKEQSALLEESFKQHSTLNPRQKQALARQLNLRPRQVEVWFQNRRARTK 210
                788899***********************************************98 PP
2HD-ZIP_I/II124.64.5e-40156245191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
    PK17334.1 156 RKKLRLTKEQSALLEESFKQHSTLNPRQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 245
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-17138210IPR009057Homeodomain-like
SuperFamilySSF466899.61E-19146213IPR009057Homeodomain-like
PROSITE profilePS5007117.54152212IPR001356Homeobox domain
SMARTSM003891.9E-15154216IPR001356Homeobox domain
CDDcd000861.84E-16156213No hitNo description
PfamPF000466.7E-16156210IPR001356Homeobox domain
PROSITE patternPS000270187210IPR017970Homeobox, conserved site
PfamPF021836.0E-10212246IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.7E-23212255IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGFDDLCNTG LDLGLGFTAS ANNTCSKKPS TTTTTSSSSF EPSLTLGLSG GDPYNKARKI  60
ISSINIDVNK GGSTTTTTIT TTCHDETLNN NNMDLYRQAS PPHSAVSSFS GGGGGGGGGC  120
SRVKRERDLS SEEIEVEKVN SSRIISDEDE DGPNARKKLR LTKEQSALLE ESFKQHSTLN  180
PRQKQALARQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCETLTD ENRRLQKELQ  240
ELKALKLTHQ PLYMHMPAAT LTMCPSCERI GAGVGAGDGA SKSPFSMASK PHFYNPFTNP  300
SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204212RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970499.11e-144PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466041e-97HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2P5F2Y11e-159A0A2P5F2Y1_TREOI; Octamer-binding transcription factor
STRINGEOX917921e-142(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-86HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]