PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK17397.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NF-YC

Protein Properties

Length: 239aa MW: 26159.2 Da PI: 7.5463

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17397.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.1	1.1e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r PK17397.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.31E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	1.6E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL RDIVSRVPDY GHGHSDAAGE DRAYTKRRKA AGDECNDSDE 120 ELKRSKMLEM THGSSSGRGR GRGRGRGRGR GRTLERETSH LDPESEPCSS PQYGTKPSTI 180 LGAPVDNATD VKDPLKENTS TGDETIPIDP TSRNFDLNAD VIDSANDEKK AAAAAAAAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	150	RGRGRGRGRG
2	141	151	RGRGRGRGRGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024021127.1	1e-111	dr1-associated corepressor isoform X2
TrEMBL	A0A2P5E9B4	1e-122	A0A2P5E9B4_TREOI; Nuclear transcription factor Y subunit C
STRING	EMJ19900	1e-107	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-72	nuclear factor Y, subunit C11