PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17424.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 327aa    MW: 38005.8 Da    PI: 6.5098
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17424.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53e-2051104356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++++q+++Le++Fe+++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  PK17424.1  51 KKRRLSSNQVKALERYFEMENKLEPERKSKLADELGLQPRQVAIWFQNRRARWK 104
                45689************************************************9 PP
2HD-ZIP_I/II126.21.5e-4051142293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrls++qvk+LE+ Fe+e+kLeperK++la eLglqprqva+WFqnrRAR+ktkqlEkdy+ Lk++yd+lk + e+L+k+++ L++++++
    PK17424.1  51 KKRRLSSNQVKALERYFEMENKLEPERKSKLADELGLQPRQVAIWFQNRRARWKTKQLEKDYNLLKANYDSLKFSYEALQKQNDVLTKKVRQ 142
                  9**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.7546106IPR001356Homeobox domain
SMARTSM003895.8E-1949110IPR001356Homeobox domain
PfamPF000461.8E-1751104IPR001356Homeobox domain
SuperFamilySSF466896.84E-1951117IPR009057Homeodomain-like
CDDcd000865.38E-1651107No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2053113IPR009057Homeodomain-like
PRINTSPR000311.1E-57786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000311.1E-586102IPR000047Helix-turn-helix motif
PfamPF021835.6E-14106147IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKRFNSSDSL GALVTISQPK ETKNNQGYSK EFQAMLDSLD QEDCNEEYTG KKRRLSSNQV  60
KALERYFEME NKLEPERKSK LADELGLQPR QVAIWFQNRR ARWKTKQLEK DYNLLKANYD  120
SLKFSYEALQ KQNDVLTKKV RQLNTKLATE SEESSQSVKE DHHQSPFSGH ESNGLDHSKV  180
SCELFHQEND NNNNNYNYKG AEQLLLLHPH HNHQHHESIY GNYYAKSCKD GYSDSDSING  240
VTKDQDHKKL EYSLGPNGSN SSSCSNTMEN WIQISDYNNY SRAFPVKICQ PQLMRMEDQT  300
LFSSEDSCNF LSVDQAPTLH WYFADHQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885283.11e-114homeobox-leucine zipper protein ATHB-6-like isoform X2
RefseqXP_015885285.11e-114homeobox-leucine zipper protein ATHB-6-like isoform X2
TrEMBLA0A2P5D9T21e-134A0A2P5D9T2_TREOI; Octamer-binding transcription factor
STRINGEMJ269491e-100(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-50homeobox protein 16