PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17569.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family DBB
Protein Properties Length: 210aa    MW: 23320.2 Da    PI: 6.9052
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17569.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.1e-08434535
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                C+ +e+  ++lfC  ++  lC +C ++ Hk
  PK17569.1  4 LCDVCEKAAAILFCAADEAALCSSCDDKVHK 34
               7******99*******************995 PP
2zf-B_box25.23.5e-085292238
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
               + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  PK17569.1 52 DVPRCDICESGPAFFYCEIDGSSLCLQCDMIVHVGgkrtHR 92
               5799******99******************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.011147IPR000315B-box-type zinc finger
SMARTSM003364.4E-7147IPR000315B-box-type zinc finger
CDDcd000212.42E-5345No hitNo description
PfamPF006431.1E-6343IPR000315B-box-type zinc finger
SMARTSM003361.2E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9875196IPR000315B-box-type zinc finger
PfamPF006431.8E-55292IPR000315B-box-type zinc finger
CDDcd000211.43E-65493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MRTLCDVCEK AAAILFCAAD EAALCSSCDD KVHKCNKLAS RHVRVGLADP SDVPRCDICE  60
SGPAFFYCEI DGSSLCLQCD MIVHVGGKRT HRRYLLLRQR IKFPGDKSGN LEELRLPPPL  120
DPDEARREQS QPPRLNQQNH RATPVADLNN DNNNNDGGAK MDNKLIDLNS QPHRIHGQPS  180
TNRGIDALRG TNHESTSVVP VVSFEREPEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030222.11e-121B-box zinc finger protein 19 isoform X2
SwissprotC0SVM52e-78BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2P5BGQ21e-121A0A2P5BGQ2_PARAD; B-box-type zinc finger
STRINGcassava4.1_016111m1e-109(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-79DBB family protein