PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17701.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YA
Protein Properties Length: 327aa    MW: 36278.7 Da    PI: 7.5204
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17701.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.62.8e-30175230258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 p+YVNaKQy++Il+RR+ Rakle+++k   k rkpylheSRh hAl+R+RgsgGrF
  PK17701.1 175 PPIYVNAKQYRAILRRRKFRAKLEAQNKF-LKVRKPYLHESRHLHALKRARGSGGRF 230
                59***************************.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.1E-34172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.87173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-25176230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-22176198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-22207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
XSESQVFVGC SSWEDGSTES HAQQSSVSKS LSLNMGVSTQ QFNNTKQLIF QFQDQDSSST  60
QSTGQSYSEG ASMKGNLYGN DMISTLSGYN ENQGKTMGSH IKQVSLMGNQ DFVLPSQLEY  120
SQPIAHIPYG YAEPYFGGLL AAAAYGPHAV VHNSQVVGLA PARVPLPLDL TEDEPPIYVN  180
AKQYRAILRR RKFRAKLEAQ NKFLKVRKPY LHESRHLHAL KRARGSGGRF LNSKDVQESN  240
HATTGHDLHS SSSARSHMNK EMMESEAQQL ENYKDGSSTT SCSEVTSASN SDDIFQQQEF  300
RFSGYPMHGH DVDSRRGVNQ HHNSTCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18174235263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022573.11e-153nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A2P5FEI51e-161A0A2P5FEI5_TREOI; Nuclear transcription factor Y subunit A
STRINGXP_010087689.11e-151(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-46nuclear factor Y, subunit A3