PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17878.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 116aa    MW: 12656.3 Da    PI: 10.6587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17878.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-201161256
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  PK17878.1 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 61
               69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-231169IPR016177DNA-binding domain
PROSITE profilePS5103222.7211168IPR001471AP2/ERF domain
CDDcd000182.30E-291168No hitNo description
PfamPF008471.3E-131160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-321168IPR001471AP2/ERF domain
SMARTSM003801.8E-351174IPR001471AP2/ERF domain
PRINTSPR003672.9E-111223IPR001471AP2/ERF domain
PRINTSPR003672.9E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MASPSSSREG HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARSLRG  60
AKAKTNFPPP VTAGLSLDLN LPTGTHWSST TNRLVIGEFL HTGVLKDMNS STATAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-231174569ATERF1
3gcc_A2e-231174569ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890508.11e-63ethylene-responsive transcription factor 12
SwissprotQ94ID64e-41ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A0M3SU361e-60A0A0M3SU36_9ROSA; AP2/EREBP family transcription factor-like protein 9
STRINGEMJ133585e-61(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-43ERF domain protein 12