PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17885.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRF
Protein Properties Length: 163aa    MW: 18590.9 Da    PI: 9.8738
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17885.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.51.3e-2471114245
        WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                +ep+rCrRtDGKkWRCs+++l+ +k+CErH+hrgr+rsrk +e+
  PK17885.1  71 NEPWRCRRTDGKKWRCSKEALPHQKYCERHIHRGRHRSRKLVES 114
                79***************************************987 PP
2QLQ385.2e-14841336
        QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
               FT  Ql++L  Q+l+yKy+ a++ vP +L+q+i+
  PK17885.1  8 FTILQLHELQLQALIYKYIEAGLAVPYHLVQPIW 41
               7778*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-4642IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.636742IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-11841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.52570114IPR014977WRC domain
PfamPF088791.7E-2072113IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
XSSSYHGFTI LQLHELQLQA LIYKYIEAGL AVPYHLVQPI WQSFSSTGLN NNGLGIVGPI  60
LCLDPRKGME NEPWRCRRTD GKKWRCSKEA LPHQKYCERH IHRGRHRSRK LVESSYTNSK  120
KTTMATATTT STTMTDLSIS LHVNENNATR STILFPSIDF QPN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029096.12e-49growth-regulating factor 10
SwissprotQ6AWX74e-37GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A2P5CSQ95e-68A0A2P5CSQ9_TREOI; Growth-regulating factor
STRINGPOPTR_0001s08310.12e-46(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141951017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-31growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]