PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18158.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 226aa    MW: 26461.4 Da    PI: 10.0254
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18158.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52241492128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 pGfrFhPtdeelv +yLk+kv++k++++ + ik++diyk++PwdLp  + ++++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk++++ +++++
  PK18158.1  24 LPGFRFHPTDEELVGFYLKRKVNNKPITI-DLIKSIDIYKYDPWDLPkGSSSGGDKEWYFFCKRGRKYKNSVRPNRVTGSGFWKATGIDKPIVR-NNNHI 121
                69***************************.99***************446667899*************************************9.9999* PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                glkktLv+y+g+a kg+ktdW+mhe+rl
  PK18158.1 122 GLKKTLVYYRGSAGKGTKTDWMMHEFRL 149
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.88523179IPR003441NAC domain
SuperFamilySSF1019416.28E-5823179IPR003441NAC domain
PfamPF023655.6E-2725149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
IYNMGSNNNN NHIKDHDDHD DDVLPGFRFH PTDEELVGFY LKRKVNNKPI TIDLIKSIDI  60
YKYDPWDLPK GSSSGGDKEW YFFCKRGRKY KNSVRPNRVT GSGFWKATGI DKPIVRNNNH  120
IGLKKTLVYY RGSAGKGTKT DWMMHEFRLP HNSNNNTTTT TDPQLLEAEI WTLCRIFKRN  180
VSYRKYTSDW RELSSKVRTT THQQPLMDSK NNAMMINNNN NNNNYX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-532518522174NAC domain-containing protein 19
3swm_B6e-532518522174NAC domain-containing protein 19
3swm_C6e-532518522174NAC domain-containing protein 19
3swm_D6e-532518522174NAC domain-containing protein 19
3swp_A6e-532518522174NAC domain-containing protein 19
3swp_B6e-532518522174NAC domain-containing protein 19
3swp_C6e-532518522174NAC domain-containing protein 19
3swp_D6e-532518522174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882119.11e-101transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-85NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2P5DV651e-106A0A2P5DV65_PARAD; NAC domain containing protein
STRINGXP_002513398.13e-98(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.18e-81NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]