PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18231.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 172aa    MW: 19499.1 Da    PI: 10.8191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18231.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.2e-121391048
                     HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     e+lvd++++ G g+W++ ++  g++R++k+c++rw +yl
        PK18231.1  1 EKLVDYITRNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 39
                     79***********************************97 PP
2Myb_DNA-binding53.46e-174590148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+++++E++l++++++ lG++ W+tIa +++ gRt++++k+ w+++l
        PK18231.1 45 RGKFSEDEEKLIINLHAVLGNK-WSTIAGHLP-GRTDNEIKNLWNTHL 90
                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.16E-4139No hitNo description
SuperFamilySSF466891.45E-23186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-17146IPR009057Homeodomain-like
SMARTSM007172141IPR001005SANT/Myb domain
PROSITE profilePS5129411.438139IPR017930Myb domain
PfamPF002493.8E-9139IPR001005SANT/Myb domain
PROSITE profilePS5129425.6254094IPR017930Myb domain
SMARTSM007171.0E-134492IPR001005SANT/Myb domain
PfamPF002493.2E-154590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-264794IPR009057Homeodomain-like
CDDcd001671.56E-104790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
EKLVDYITRN GHGSWRALPK LAGLNRCGKS CRLRWTNYLR PDIKRGKFSE DEEKLIINLH  60
AVLGNKWSTI AGHLPGRTDN EIKNLWNTHL KKKLLQMGID PVTHRPRTDI HLNLLSNLPQ  120
LIVAANFASN FLNNNNNTTN QSLSKLQLLQ NIFQVLGPTS NPNPNPNPNP NX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2219416108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087464.28e-85transcription factor MYB41
SwissprotQ9S9Z21e-68MYB93_ARATH; Transcription factor MYB93
SwissprotQ9SBF34e-69MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A2P5DWB55e-85A0A2P5DWB5_PARAD; MYB transcription factor
STRINGXP_010087464.14e-84(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-72myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]