PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18288.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 171aa    MW: 19479.1 Da    PI: 10.1068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18288.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.4e-062951123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  PK18288.1 29 FVCEICNKGFQRDQNLQLHRRGH 51
               89*******************88 PP
2zf-C2H214.30.00012106128123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H +t+
  PK18288.1 106 WKCEKCSKIYAVQSDWKAHSKTC 128
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-72851No hitNo description
Gene3DG3DSA:3.30.160.604.0E-62851IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0172951IPR015880Zinc finger, C2H2-like
PfamPF121712.0E-52951IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9492951IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SMARTSM0035511071101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-594127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.57E-7101126No hitNo description
SMARTSM00355170106126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
XKRSLPGHPD PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  60
SNKEMIKKRA YVCPETTCVH HHPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKIYAVQSD  120
WKAHSKTCGT REYRCDCGTL FSRKDSFITH RAFCDALAEE SARLSAAAAA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-37102166367Zinc finger protein JACKDAW
5b3h_F1e-37102166367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636357.11e-115PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-109IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A314UTF81e-114A0A314UTF8_PRUYE; Protein indeterminate-domain 12
STRINGGorai.008G002200.11e-114(Gossypium raimondii)
STRINGGorai.009G418600.11e-114(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-104indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]