PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18312.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SBP
Protein Properties Length: 373aa    MW: 40219.4 Da    PI: 8.6104
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18312.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.57.9e-4375150176
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                +CqvegC++dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  PK18312.1  75 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPKVVVNGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 150
                6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-3569137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.60773150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.59E-4174154IPR004333Transcription factor, SBP-box
PfamPF031107.3E-3376149IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGSSSMTESG GSSSSSPPNS STESLNGLKF GQKIYFEDVG IGATPKSGAG SSSCSGATPP  60
KKVRGSPVHS GQPPRCQVEG CKVDLSDAKA YYSRHKVCGM HSKSPKVVVN GLEQRFCQQC  120
SRFHQLPEFD QGKRSCRRRL AGHNERRRKP PHGSLLSTRY DNSGRVGSFL MDFSAYPRLS  180
GRDAWPNGRI SERVPGNQSA IPTGKYIPYP WQSNSDNSSS NLYLQTSGCG TSIPANHGIP  240
PPPGECISAV ADSSCALSLL SNEPWGSRNR SSSGIGLQSL MNTQGAPVAE PTSATHSETV  300
NHFQNTSWCM KDDMDGSSSH QILPDLGLGQ FSHSLTGQFS GELELSQQGR RPYMESEHSR  360
DYGSSSQHMH WSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31761491184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102560.10.0squamosa promoter-binding-like protein 14
TrEMBLW9RJ150.0W9RJ15_9ROSA; Squamosa promoter-binding-like protein 15
STRINGXP_010102560.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.16e-61squamosa promoter binding protein-like 9