PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18312.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SBP
Protein Properties Length: 314aa    MW: 34728 Da    PI: 5.6898
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18312.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP37.37.5e-122264872
               SEEETTT--SS--S-STTTT----- CS
        SBP 48 rfhelsefDeekrsCrrrLakhner 72
               rfh+l efD++krsCrrrLa+hne 
  PK18312.2  2 RFHQLPEFDQGKRSCRRRLAGHNEX 26
               9**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.588130IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-9230IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.5E-4217IPR004333Transcription factor, SBP-box
PfamPF031107.2E-6226IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
XRFHQLPEFD QGKRSCRRRL AGHNEXSEEA TTWFITVYTL WLDFVPYICL DVSILQLQAN  60
VILKDPDCGL LPSHYIDFGF SHSPQLVLND TDLKYVLFVN VDNSGRVGSF LMDFSAYPRL  120
SGRDAWPNGR ISERVPGNQS AIPTGKYIPY PWQSNSDNSS SNLYLQTSGC GTSIPANHGI  180
PPPPGECISA VADSSCALSL LSNEPWGSRN RSSSGIGLQS LMNTQGAPVA EPTSATHSET  240
VNHFQNTSWC MKDDMDGSSS HQILPDLGLG QFSHSLTGQF SGELELSQQG RRPYMESEHS  300
RDYGSSSQHM HWSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102560.11e-109squamosa promoter-binding-like protein 14
TrEMBLW9RJ151e-107W9RJ15_9ROSA; Squamosa promoter-binding-like protein 15
STRINGXP_010102560.11e-108(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-10squamosa promoter binding protein-like 9