PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18677.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 220aa    MW: 24897.5 Da    PI: 8.2563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18677.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162244123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C + F ++  L  H++ H
  PK18677.1 22 FSCNYCQRKFYSSQALGGHQNAH 44
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.54E-61950No hitNo description
PROSITE profilePS5015711.4272249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
NNESDDQDQD QDHHDDHEPR VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKRSSSGYHH  60
HQFMHKNNNM FGMMMSSSNS IPCRYSSLAS LPLHGLSFNR SLGIQVHSSM IHKPSSSSSS  120
FYHHQQNQPK TAMIMSPSSP NGCLRFQQPA VGMLQIPETF CGDQTSPGGF LMSPPSGGPA  180
SFEFGRQRYS PVSRSDRDDL EEIGGFWWNK TKQDDKLQKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021648556.14e-41zinc finger protein 1
TrEMBLA0A2P5E6145e-47A0A2P5E614_TREOI; Zinc finger, C2H
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-23zinc-finger protein 1