PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK18821.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 207aa MW: 24254 Da PI: 6.246

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK18821.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.6	4.5e-31	16	135	4	127
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 f+F+Pt+eel+ +L+ k+ + + +l+++i+++ + ++++Pw+Lp +k+ +++ ew+f ++ + k+++++r+nr+tk+g+Wk+tgk+++ + PK18821.1 16 FFKFKPTEEELI-AHLNLKTMEMESDLDSCIAQIdHFCEWQPWELPplSKM-ESNMEWWFLCRPNYKNRHNNRSNRTTKTGFWKKTGKERKTKG----CN 109 59********.88999999999999899669****953344.4567****************************999876....67 PP NAM 101 glkktLvfykgrapkgektdWvmheyr 127 g k++Lvf++g++p ++t+Wv+hey PK18821.1 110 GRKRILVFHEGTSPG-KRTNWVLHEYY 135 9****998886.9******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.18	13	158	IPR003441	NAC domain
SuperFamily	SSF101941	6.67E-32	13	158	IPR003441	NAC domain
Pfam	PF02365	1.8E-17	15	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSDYVNESPL WVCPSFFKFK PTEEELIAHL NLKTMEMESD LDSCIAQIDH FCEWQPWELP 60 PLSKMESNME WWFLCRPNYK NRHNNRSNRT TKTGFWKKTG KERKTKGCNG RKRILVFHEG 120 TSPGKRTNWV LHEYYSLQPD IAFSLQKPAY VICRLKLKNH ENGQNEDAEK SPSSEIENDV 180 ENLLESTTTT PVNCQDEVNN DISSLQX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-17	13	155	17	162	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-17	13	155	17	162	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-17	13	155	17	162	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-17	13	155	17	162	NO APICAL MERISTEM PROTEIN
3swm_A	9e-17	13	155	20	165	NAC domain-containing protein 19
3swm_B	9e-17	13	155	20	165	NAC domain-containing protein 19
3swm_C	9e-17	13	155	20	165	NAC domain-containing protein 19
3swm_D	9e-17	13	155	20	165	NAC domain-containing protein 19
3swp_A	9e-17	13	155	20	165	NAC domain-containing protein 19
3swp_B	9e-17	13	155	20	165	NAC domain-containing protein 19
3swp_C	9e-17	13	155	20	165	NAC domain-containing protein 19
3swp_D	9e-17	13	155	20	165	NAC domain-containing protein 19
4dul_A	8e-17	13	155	17	162	NAC domain-containing protein 19
4dul_B	8e-17	13	155	17	162	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5FH96	2e-67	A0A2P5FH96_TREOI; NAC domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19852	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	3e-24	NAC transcription factor-like 9