PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18855.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 125aa    MW: 14439.8 Da    PI: 9.9366
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18855.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.5e-1742102156
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 
                s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g+
  PK18855.1  42 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWGH 102
                57*******************999955656446*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1342102IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1842111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-1743110IPR001471AP2/ERF domain
PROSITE profilePS5103220.21843109IPR001471AP2/ERF domain
SMARTSM003801.0E-2643115IPR001471AP2/ERF domain
PRINTSPR003673.5E-64455IPR001471AP2/ERF domain
PRINTSPR003673.5E-691111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAKLSQKNNS ANVNTNNNGT HVPKVKRTRR SVPRDSPPQR SSIYRGVTRH RWTGRYEAHL  60
WDKNCWNESQ NKKGRQVYLG AYDDEEAAAH AYDLAALKYW GHDTILNFPL STYEKELKDM  120
EGVAX
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245606.12e-67PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN44e-46AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2Q6I27e-65A0A0D2Q6I2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JJ907e-65A0A1U8JJ90_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A2K2B9736e-65A0A2K2B973_POPTR; Uncharacterized protein
STRINGGorai.009G008800.11e-65(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-43ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]