PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK18945.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 225aa MW: 25873.2 Da PI: 9.6723

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK18945.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.9	2.4e-15	143	224	1	81
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 ffk+ +++++ ++l++p fa+ + ++ +++tl++++ +++sW++k++y+ ++ + +++GW++Fv +n+Lk+gD++v PK18945.1 143 FFKTIMQPYYILGRNLTFPQVFAQMYlNNYRFCDVTLKVQN-ENKSWRLKYTYTEHKIAqPRFQGGWQSFVVDNNLKVGDVCV 224 99*******************999644444666666665.77*****777776699******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.4E-17	137	224	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.75E-15	138	224	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.58E-16	142	224	No hit	No description
SMART	SM01019	0.0051	143	225	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-12	143	224	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.125	143	225	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
GYMLTFRYDG NSEIYVIIFG TNNVEIDYPT APVNFCKSSI DNGKLRVPKR EVIDNVDSFE 60 ILDDISSCPK TGVKSSCSQP SKRMKTNPPG KLDSPSKSNG DRFATYPTKK MTNGIRKTMK 120 SLTHSEKIVA FQRTNDFTSE HPFFKTIMQP YYILGRNLTF PQVFAQMYLN NYRFCDVTLK 180 VQNENKSWRL KYTYTEHKIA QPRFQGGWQS FVVDNNLKVG DVCVX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5FY29	6e-68	A0A2P5FY29_TREOI; B3 DNA binding domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-16	B3 family protein