PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18992.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 351aa    MW: 39635.3 Da    PI: 4.9867
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18992.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-1957110356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  PK18992.1  57 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                566899***********************************************9 PP
2HD-ZIP_I/II128.92.1e-4156148193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk + ++L++++e+L +e++e
    PK18992.1  56 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGHLKANYDALKLSYDTLKHDNESLVKEIRE 148
                  69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1945114IPR009057Homeodomain-like
PROSITE profilePS5007117.44352112IPR001356Homeobox domain
SMARTSM003896.3E-1855116IPR001356Homeobox domain
CDDcd000862.01E-1657113No hitNo description
PfamPF000464.1E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-2059119IPR009057Homeodomain-like
PRINTSPR000311.1E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.1E-592108IPR000047Helix-turn-helix motif
PfamPF021832.0E-17112154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MKRLSSDDSL GALMSVCPTT EEHSPSSNHI YGREFRSMLD GLDEEGCVEE SGHVSEKKRR  60
LSVDQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGH  120
LKANYDALKL SYDTLKHDNE SLVKEIRELK SKLQDEKSES NNLSVKEELV LIHNIGPTES  180
ENKQAVPHPD HHHHHNNHVL PSEECKELNF ESLNDTNNGV VLEVSSMFPD FNKDGSSDSD  240
SSAILNDDIN LNSNNNNSSC SPNAAISSTA LLQTPAASAS ASLNFNCSSS SNNNNNNNNN  300
NSSNCFQFQK AASFQPQFVK IEEHNFFAEE ACNFFSDDQA PTLQWYCSDQ W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352153e-40AC235215.1 Glycine max strain Williams 82 clone GM_WBb0020M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651837.11e-146PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2
TrEMBLA0A2P5AY581e-170A0A2P5AY58_PARAD; Homeobox protein
STRINGXP_008235150.11e-144(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-66homeobox protein 6