PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19059.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 164aa MW: 18469.5 Da PI: 9.717

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19059.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.1	9.9e-55	21	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++s+ +e PK19059.1 21 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-TIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSngCHE 119 79**************************.89***********988899************************************977778 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+ pkg+kt+W+mheyrl PK19059.1 120 KVGVKKALVFYGGKPPKGVKTNWIMHEYRL 149 8*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-61	16	155	IPR003441	NAC domain
PROSITE profile	PS51005	56.884	21	164	IPR003441	NAC domain
Pfam	PF02365	4.1E-29	22	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MENSTDSSSS LRSSQEQHPK LPPGFRFHPT DEELVVHYLK RKAASAPLPV TIIAEIDLYK 60 FDPWELPSKA SFGEQEWYFF SPRDRKYPNG ARPNRAATSG YWKATGTDKP IMSSNGCHEK 120 VGVKKALVFY GGKPPKGVKT NWIMHEYRLV DSSSSSSTNI NNIX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-69	21	162	17	156	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-69	21	162	17	156	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-69	21	162	17	156	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-69	21	162	17	156	NO APICAL MERISTEM PROTEIN
3swm_A	2e-69	21	162	20	159	NAC domain-containing protein 19
3swm_B	2e-69	21	162	20	159	NAC domain-containing protein 19
3swm_C	2e-69	21	162	20	159	NAC domain-containing protein 19
3swm_D	2e-69	21	162	20	159	NAC domain-containing protein 19
3swp_A	2e-69	21	162	20	159	NAC domain-containing protein 19
3swp_B	2e-69	21	162	20	159	NAC domain-containing protein 19
3swp_C	2e-69	21	162	20	159	NAC domain-containing protein 19
3swp_D	2e-69	21	162	20	159	NAC domain-containing protein 19
4dul_A	1e-69	21	162	17	156	NAC domain-containing protein 19
4dul_B	1e-69	21	162	17	156	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018807000.1	3e-95	PREDICTED: NAC transcription factor 25
Swissprot	A2YMR0	1e-90	NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBL	A0A2I4DIM4	6e-94	A0A2I4DIM4_JUGRE; NAC transcription factor 25
STRING	VIT_00s0375g00040.t01	2e-93	(Vitis vinifera)
STRING	EOY28334	2e-93	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	4e-85	NAC domain containing protein 25