PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19116.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 74aa MW: 8528.33 Da PI: 4.0537

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19116.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.1	2.1e-10	2	40	60	98
EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 60 vltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 v+ +GW+eF +n+L++gD+++F+l +r e l+v+++r PK19116.1 2 VIYDGWNEFMTENDLEVGDVCIFELLNRAEIVLYVSIVR 40 6789********************999888889999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.251	1	42	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.73E-9	2	41	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.8E-8	2	40	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.0E-8	2	40	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
XVIYDGWNEF MTENDLEVGD VCIFELLNRA EIVLYVSIVR VSDFLKQERS QVINSTEGEK 60 KPEGDVRVKI ETDS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5BZ32	4e-15	A0A2P5BZ32_PARAD; B3 DNA binding domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16088	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	9e-09	B3 family protein