PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19166.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HB-other
Protein Properties Length: 282aa    MW: 30688.3 Da    PI: 10.9242
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19166.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.92e-141231671155
                HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 ++ L + F++n+yp++++++ LA++lgLt rqV+ WF N R   
  PK19166.1 123 ATQGLYTSFKENQYPDRAKKQSLAEELGLTPRQVSKWFENMRWSV 167
                678899**********************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-15101164IPR009057Homeodomain-like
SMARTSM003892.4E-13112174IPR001356Homeobox domain
SuperFamilySSF466892.52E-13116173IPR009057Homeodomain-like
CDDcd000868.57E-12118164No hitNo description
PfamPF000467.9E-12122168IPR001356Homeobox domain
PROSITE profilePS5007113.75127170IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
EATGGKRKKK ATGQVALQLP NGNASIEKSE ATGDAINHNL ENHEHISRRR SRGKSMVKDT  60
NDSPSKLKKT MAKDTNDSPS KSKKPMAKDT YDSPSKSPIG SPKSASTGSR LKSASYKRLG  120
DAATQGLYTS FKENQYPDRA KKQSLAEELG LTPRQVSKWF ENMRWSVRHP LGREADKSGS  180
ASKRSISSPQ PDKQLLESKQ NIGASNGELP VIVVALPETC TKNEGDDKAK LLTNESSSQT  240
SAARTSGRKR SRPKIEKPTT PVVVDTNKTS GSRTRSRRKS AP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5EYJ92e-83A0A2P5EYJ9_TREOI; Octamer-binding transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.14e-14Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain