PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19352.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

M-type_MADS

Protein Properties

Length: 261aa MW: 29641 Da PI: 5.5898

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19352.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.7	2.6e-12	7	44	13	50
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f R+++++KKA S LC+ +++v+ + stgkl+ ++ PK19352.1 7 FFERKATLMKKARQFSELCESQICVVCYDSTGKLFVWP 44 889********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.199	1	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-13	5	67	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.0E-11	6	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-5	9	24	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-5	24	45	IPR002100	Transcription factor, MADS-box
Gene3D	G3DSA:3.30.710.10	3.3E-4	28	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MKNDKVFFER KATLMKKARQ FSELCESQIC VVCYDSTGKL FVWPEDSIRA HSVISNYYEK 60 LESKKRNNSE VGLSNVLGKK LRKLEEKVST TTHDNVTVNG VSSIPIMNWD EKLAILSKNS 120 LMGLAQYFEA KIKGLDEKIE MGKGKSQLIV SQTQVQNNND DHDGFDQDDY FNSLPTLMPL 180 PPPLLPSMPQ HYGPLNYEDY PCNDTEYSES QFDDGQIQEF YGATGVSHQL HYRASASGYY 240 ATDHHLQSMS TVSSPLQYCN X

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15475	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-13	AGAMOUS-like 103