PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19449.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 756aa    MW: 82493.9 Da    PI: 5.8472
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19449.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.4e-2054109156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PK19449.1  54 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 109
                789999***********************************************998 PP
2START213.11e-662444731206
                HHHHHHHHHHHHHHHHC-TT-EEEE.............EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
      START   1 elaeeaaqelvkkalaeepgWvkss.............esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                ela +a++el+++a+a++p+W                 e++n+de+l++f+++ +      ++ea+r++ vv+m++++lve+l+d++ qW++ +     +
  PK19449.1 244 ELAVAAMEELIRMAQAGDPLWIPAHhdnnsisggnnstEILNEDEYLRTFPRGIGpkplgMKSEASRETNVVIMNHTNLVEILMDVN-QWSTIFCgivsR 342
                57899*****************99999999**********************999********************************.******99999* PP

                EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
      START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                a+tl+ +s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ p    + R++++pSg+li++++ng+skvtwvehv+
  PK19449.1 343 AMTLDILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGTWAVVDVSLDNLRPSP----ISRSRRRPSGCLIQELPNGYSKVTWVEHVE 438
                ****************************************************************99....69**************************** PP

                --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                +++r +h+++++lv+sg+a+gak+wvatl+rqce+
  PK19449.1 439 VDDRAVHNIYKPLVNSGIAFGAKRWVATLDRQCER 473
                *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2239109IPR009057Homeodomain-like
SuperFamilySSF466893.09E-1939111IPR009057Homeodomain-like
PROSITE profilePS5007117.0751111IPR001356Homeobox domain
SMARTSM003898.7E-1952115IPR001356Homeobox domain
CDDcd000867.40E-1953112No hitNo description
PfamPF000462.2E-1754109IPR001356Homeobox domain
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
SuperFamilySSF559611.1E-36235475No hitNo description
PROSITE profilePS5084845.431235476IPR002913START domain
CDDcd088758.04E-128239472No hitNo description
SMARTSM002342.9E-65244473IPR002913START domain
PfamPF018522.7E-55245473IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-6353473IPR023393START-like domain
SuperFamilySSF559612.2E-25493672No hitNo description
SuperFamilySSF559612.2E-25708747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MDISHNKSIS ESDQLGLGAN LRDDDLETKS GTELIMEADP SGDDELDPTQ KSKRKRYHRH  60
TQRQIQEMEA FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKA QHERHENSIL  120
KAENDKLRAE NNRYKEALSN ATCPNCGGPA ALGEMSFDEQ HLRIENARLR EEIDRISGIA  180
AKYAGKPLSS FSHLSSHASR TLDISGVGNF GSQSGFVGEM FGATGDLLRS VSVPTEADKP  240
IIVELAVAAM EELIRMAQAG DPLWIPAHHD NNSISGGNNS TEILNEDEYL RTFPRGIGPK  300
PLGMKSEASR ETNVVIMNHT NLVEILMDVN QWSTIFCGIV SRAMTLDILS TGVAGNYNGA  360
LQVMTAEFQV PSPLVPTREN YFVRYCKQHG DGTWAVVDVS LDNLRPSPIS RSRRRPSGCL  420
IQELPNGYSK VTWVEHVEVD DRAVHNIYKP LVNSGIAFGA KRWVATLDRQ CERLASSMAS  480
NIPAGDLCVI TSPDGRKSML KLAERMVMSF CVGVGASTAH AWTTLSATGS DDVRVMTRKS  540
MDDPGRPPGI VLSAATSFWL PVPPKRVFDF LRDENSRSEW DILSNGGLVQ EMAHIANGRD  600
PGNCVSLLRV NSANSSQSNM LILQESCTDS TGSYVIYAPV DIVAMNVVLS GGDPDYVALL  660
PSGFAILPDG PANNNNNINN NNNNSHNSGI INNNGPAGSG IVEVGSGGSL LTVAFQILVD  720
SVPTAKLSLG SVATVNNLIK CTVERIRAAV TSENVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024692.10.0homeobox-leucine zipper protein MERISTEM L1 isoform X1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A061GGE70.0A0A061GGE7_THECC; Protodermal factor 2 isoform 1
STRINGEOY286240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]