PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19571.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 181aa    MW: 21347.2 Da    PI: 9.1374
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19571.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-1984138256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq + Lee F+++++++ +++e LA +l+L  rqV vWFqNrRa+ k
  PK19571.1  84 RKKLRLSKEQSRLLEESFRQHHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSK 138
                788899***********************************************98 PP
2HD-ZIP_I/II119.61.7e-3884172189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
    PK19571.1  84 RKKLRLSKEQSRLLEESFRQHHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRS 172
                  69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1971141IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-1872134IPR009057Homeodomain-like
PROSITE profilePS5007116.8680140IPR001356Homeobox domain
SMARTSM003897.5E-1782144IPR001356Homeobox domain
CDDcd000866.44E-1483141No hitNo description
PfamPF000463.8E-1684138IPR001356Homeobox domain
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PfamPF021831.0E-9140173IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-18140181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAILPTTPSN LELTIGFSSS PSLSSSVMRD LDINQVPSVG RDHHHHLHHH LDYDHNNINQ  60
EEWMEEEDEI MMSSGNTTHS GPPRKKLRLS KEQSRLLEES FRQHHTLNPK QKEALALQLK  120
LRPRQVEVWF QNRRARSKLK QTEMECEYLK RWFGSLTEQN RRLQREVEEL RSMKVAPPKV  180
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297002e-80KP229700.1 UNVERIFIED: Boehmeria nivea Homeobox-leucine zipper protein-like (HDZIP01) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024875.11e-82homeobox-leucine zipper protein HOX3
SwissprotQ0JKX12e-61HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-61HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2P5FK792e-84A0A2P5FK79_TREOI; Octamer-binding transcription factor
STRINGXP_010101726.15e-80(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.19e-51homeobox-leucine zipper protein 17