PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19621.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 179aa    MW: 19976.8 Da    PI: 5.5567
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19621.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-091773348
                     SS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
                      W +eE++ + +a++ + ++            +Wk+ a++++  ++ +++k +++++l
        PK19621.2 17 TWNKEEEKAFENAIAIHWKNttdqeedeeseeQWKKMASMVP-AKSMEELKRHYRMLL 73
                     7*****************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.8E-61475IPR001005SANT/Myb domain
PfamPF002491.2E-61673IPR001005SANT/Myb domain
SuperFamilySSF466894.09E-71676IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-41774IPR009057Homeodomain-like
PROSITE profilePS500906.1791873IPR017877Myb-like domain
CDDcd001671.06E-61873No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
TTNTMSSTST TTDITTTWNK EEEKAFENAI AIHWKNTTDQ EEDEESEEQW KKMASMVPAK  60
SMEELKRHYR MLLDDITAIQ DGRIPVPNYS TIPGSDSSNK TMMSKDNSHD VSGSDNKRMS  120
SSGHGSSGFS GLQAQDSGGH GGKGISRAEQ ERRKGIPWTE EEHRYCSSCA HTYTILVLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1318951179RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883030.11e-47transcription factor MYBS1
TrEMBLA0A2P5CM276e-50A0A2P5CM27_PARAD; GAMYB transcription factor
STRINGXP_008244028.12e-45(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-28MYB family protein