PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19694.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WOX
Protein Properties Length: 76aa    MW: 9021.97 Da    PI: 9.8622
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19694.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.73.6e-172375249
               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHH CS
   Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFq 49
               ++R+t+t+eql +Leel++  +r+p+a++++e++  l    +++ ++V++WFq
  PK19694.1 23 SSRWTPTPEQLLVLEELYQHgKRTPTAQQIQEITIMLrrfgKIEGKNVFYWFQ 75
               58*****************99*******************************9 PP
2Wus_type_Homeobox94.59.5e-312275255
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQ 55
                       +++RWtPtpeQ+ +Leely++G rtP++++iq+it +L+++Gkie+kNVfyWFQ
          PK19694.1 22 QSSRWTPTPEQLLVLEELYQHGKRTPTAQQIQEITIMLRRFGKIEGKNVFYWFQ 75
                       689**************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.5351976IPR001356Homeobox domain
SuperFamilySSF466892.11E-92275IPR009057Homeodomain-like
PfamPF000467.5E-152375IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-52475IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
HHHHHHQNSR SSSEVVVGVP MQSSRWTPTP EQLLVLEELY QHGKRTPTAQ QIQEITIMLR  60
RFGKIEGKNV FYWFQX
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093366.28e-28WUSCHEL-related homeobox 1
SwissprotQ6X7K03e-23WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A2P5DZS76e-31A0A2P5DZS7_PARAD; Homeodomain transcription factor
TrEMBLA0A2P5FK247e-31A0A2P5FK24_TREOI; Homeodomain transcription factor
STRINGXP_010093366.12e-27(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-25WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]