PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19717.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TCP
Protein Properties Length: 309aa    MW: 34416.3 Da    PI: 8.4787
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19717.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.52.3e-421382863132
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssasn 84 
                +kkdrhski+T++g+RdRRvRls+e+a++fFdL d+LGfdk+skt+eWLl ++k+aike                      ++++ sec           
  PK19717.1 138 TKKDRHSKIYTAQGLRDRRVRLSIEIAREFFDLHDMLGFDKASKTLEWLLIKSKKAIKEESLArstpssycnnislsstttTTTTTSEC----------- 226
                69*********************************************************888833444444444444433323333444........... PP

        TCP  85 sssg..............kaaksaa.kskksqksaasalnlakesrakarararertrekmri 132
                   +              +  +++     k+ + ++ +l+ +kesra ararar rt+ek + 
  PK19717.1 227 ---EeaevneavvdpsshDPHEENLlVCTKNFDVEKLMLSNSKESRAMARARARARTKEKRSP 286
                ...04444444444444455555555899999999999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-38138284IPR005333Transcription factor, TCP
PROSITE profilePS5136933.474139197IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.002266283IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MFSSINNNSP FPQYYFPSSS SSSSSYPPPP FPPPPLPLPF PPQQQEPNSS SSTVDTNNNN  60
NNLFYSQNHH FHDQIPLSTH PFFVSNTTIN NNNNNITPQI LIPAETFINL GVSNSPPNAM  120
VPASSNKVHQ EKLGKNGTKK DRHSKIYTAQ GLRDRRVRLS IEIAREFFDL HDMLGFDKAS  180
KTLEWLLIKS KKAIKEESLA RSTPSSYCNN ISLSSTTTTT TTTSECEEAE VNEAVVDPSS  240
HDPHEENLLV CTKNFDVEKL MLSNSKESRA MARARARART KEKRSPNLIL KKGPSLGVDD  300
HHHQSSSAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268277RAMARARARA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5F6U23e-57A0A2P5F6U2_TREOI; TCP transcription factor (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-28TCP family protein