PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19730.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bZIP
Protein Properties Length: 127aa    MW: 14964.8 Da    PI: 6.1089
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19730.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-101481663
               HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1 16 AArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
               +ArrsR RK++ ++eL   v  L +eN+ L+++l+++++  +++ +e+
  PK19730.1  1 SARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNNMSESHDRVLQEN 48
               8******************************99999999888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579591.29E-7139No hitNo description
Gene3DG3DSA:1.20.5.1705.9E-8164No hitNo description
PfamPF001707.9E-8148IPR004827Basic-leucine zipper domain
CDDcd147026.51E-10142No hitNo description
SMARTSM003380.0077150IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
SARRSRMRKQ KHLDELWSQV VRLRTENHNL IDKLNNMSES HDRVLQENSR LKEEASDLRQ  60
MLTALQIGSP NNYNDAVLRT TSIHDQDDDD DNGGDHDDDH HNLDHEGMVD RNNNNNDLNR  120
NHNHRHX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
129RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634785.11e-38basic leucine zipper 43-like
SwissprotQ9FMC23e-21BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2P5AUX26e-38A0A2P5AUX2_TREOI; Basic-leucine zipper transcription factor
STRINGcassava4.1_022183m4e-38(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-32basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]